Genome-wide analysis suggests a differential microRNA signature associated with normal and diabetic human corneal limbus.

Abstract

Small non-coding RNAs, in particular microRNAs (miRNAs), regulate fine-tuning of gene expression and can impact a wide range of biological processes. However, their roles in normal and diseased limbal epithelial stem cells (LESC) remain unknown. Using deep sequencing analysis, we investigated miRNA expression profiles in central and limbal regions of normal and diabetic human corneas. We identified differentially expressed miRNAs in limbus vs. central cornea in normal and diabetic (DM) corneas including both type 1 (T1DM/IDDM) and type 2 (T2DM/NIDDM) diabetes. Some miRNAs such as miR-10b that was upregulated in limbus vs. central cornea and in diabetic vs. normal limbus also showed significant increase in T1DM vs. T2DM limbus. Overexpression of miR-10b increased Ki-67 staining in human organ-cultured corneas and proliferation rate in cultured corneal epithelial cells. MiR-10b transfected human organ-cultured corneas showed downregulation of PAX6 and DKK1 and upregulation of keratin 17 protein expression levels. In summary, we report for the first time differential miRNA signatures of T1DM and T2DM corneal limbus harboring LESC and show that miR-10b could be involved in the LESC maintenance and/or their early differentiation. Furthermore, miR-10b upregulation may be an important mechanism of corneal diabetic alterations especially in the T1DM patients.

• Authors: Mangesh Kulkarni, Aleksandra Leszczynska, Gabbie Wei, Michael A Winkler, Jie Tang, Vincent A Funari, Nan Deng, Zhenqiu Liu, Vasu Punj, Sophie X Deng, Alexander V Ljubimov, Mehrnoosh Saghizadeh
• Journal: Scientific reports (Sci Rep) Vol. 7 Issue 1 Pg. 3448 (06 14 2017) ISSN: 2045-2322 [Electronic] England
• PMID: 28615632 (Publication Type: Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't)

Chemical References

• Biomarkers
• MicroRNAs

Topics

• Adult
• Aged
• Aged, 80 and over
• Biomarkers
• Cells, Cultured
• Computational Biology
• Diabetes Mellitus (genetics, metabolism)
• Diabetes Mellitus, Type 1 (genetics)
• Diabetes Mellitus, Type 2 (genetics)
• Female
• Gene Expression Profiling (methods)
• Gene Expression Regulation
• Gene Ontology
• Genome-Wide Association Study (methods)
• High-Throughput Screening Assays (methods)
• Humans
• Limbus Corneae (metabolism)
• Male
• MicroRNAs (genetics)
• Middle Aged
• Organ Culture Techniques
• RNA Interference
• Reproducibility of Results
• Transcriptome