[Increased TRIM5 is associated with a poor prognosis and immune infiltration in glioma patients].

Abstract

Tripartite motif 5 (TRIM5) plays a significant function in autophagy and involves in immune and tumor processes. While the function of TRIM5 remains poorly understood in glioma. We purpose to evaluate the possible prognostic role of TRIM5 in glioma via bioinformatics analyses. The database clinical samples of glioma in this study included low grade glioma (LGG) and glioblastoma multiforme (GBM). TRIM5 expression in glioma tissues were explored in Oncomine, GEPIA and The Cancer Genome Atlas (TCGA) databases. Survival analysis and the multivariate Cox regression analysis of TRIM5 based on TCGA were used to evaluate the prognostic role of TRIM5. The protein networks of TRIM5 was detected by STRING database. KEGG enrichment analyses were performed to predict the potential molecular pathways of TRIM5 in glioma. In addition, immune infiltration analysis was conducted by CIBERSORT and TIMER databases. We found that TRIM5 was strongly increased in glioma samples compared with normal samples in Oncomine, GEPIA and TCGA databases. Higher TRIM5 was significantly contributed to worse overall survival (OS) in LGG+GBM patients and LGG patients, while was no correlated with OS of GBM patients. Interaction networks analysis identified that IRF3, IRF7, OAS1, OAS2, OAS3, OASL, GBP1, PML, BTBD1 and BTBD2 proteins were contacted with TRIM5. Moreover, KEGG revealed that apoptosis and cancer- and immune-related pathways were enriched with elevated TRIM5. Specifically, TRIM5 could influence the immune infiltration levels, such as activated NK cells, monocytes, activated mast cells and macrophages in glioma. In conclusion, our data indicated that TRIM5 was upregulated in glioma tissues and associated with poor prognosis and immune infiltration. TRIM5 may be acted as a biomarker in prognosis and immunotherapy guidance of glioma.

• Authors: Yue Chen, Qin Li, Jie Zhang, Rui Gu, Kai Li, Gang Zhao, Hang Yuan, Tianyu Feng, Deqiong Ou, Ping Lin
• Journal: Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi (Sheng Wu Yi Xue Gong Cheng Xue Za Zhi) Vol. 37 Issue 3 Pg. 469-479 (Jun 25 2020) ISSN: 1001-5515 [Print] China
• PMID: 32597089 (Publication Type: Journal Article)

Chemical References

• Antiviral Restriction Factors
• Biomarkers, Tumor
• Carrier Proteins
• Tripartite Motif Proteins
• TRIM5 protein, human
• Ubiquitin-Protein Ligases

Topics

• Antiviral Restriction Factors
• Biomarkers, Tumor
• Brain Neoplasms (metabolism, therapy)
• Carrier Proteins
• Computational Biology
• Glioma (metabolism, therapy)
• Humans
• Immunotherapy
• Prognosis
• Survival Analysis
• Tripartite Motif Proteins (metabolism)
• Ubiquitin-Protein Ligases (metabolism)