Abstract |
Some exciting biological questions require quantifying thousands of proteins in single cells. To achieve this goal, we develop Single Cell ProtEomics by Mass Spectrometry (SCoPE-MS) and validate its ability to identify distinct human cancer cell types based on their proteomes. We use SCoPE-MS to quantify over a thousand proteins in differentiating mouse embryonic stem cells. The single-cell proteomes enable us to deconstruct cell populations and infer protein abundance relationships. Comparison between single-cell proteomes and transcriptomes indicates coordinated mRNA and protein covariation, yet many genes exhibit functionally concerted and distinct regulatory patterns at the mRNA and the protein level.
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Authors | Bogdan Budnik, Ezra Levy, Guillaume Harmange, Nikolai Slavov |
Journal | Genome biology
(Genome Biol)
Vol. 19
Issue 1
Pg. 161
(10 22 2018)
ISSN: 1474-760X [Electronic] England |
PMID | 30343672
(Publication Type: Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't)
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Chemical References |
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Topics |
- Animals
- Cell Differentiation
- Cell Line
- Humans
- Mammals
(metabolism)
- Mass Spectrometry
(methods)
- Mice
- Mouse Embryonic Stem Cells
(cytology, metabolism)
- Principal Component Analysis
- Proteome
(metabolism)
- Proteomics
(methods)
- RNA, Messenger
(genetics, metabolism)
- Single-Cell Analysis
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