Integrated microRNA-mRNA analyses reveal OPLL specific microRNA regulatory network using high-throughput sequencing.

Abstract

Ossification of the posterior longitudinal ligament (OPLL) is a genetic disorder which involves pathological heterotopic ossification of the spinal ligaments. Although studies have identified several genes that correlated with OPLL, the underlying regulation network is far from clear. Through small RNA sequencing, we compared the microRNA expressions of primary posterior longitudinal ligament cells form OPLL patients with normal patients (PLL) and identified 218 dysregulated miRNAs (FDR < 0.01). Furthermore, assessing the miRNA profiling data of multiple cell types, we found these dysregulated miRNAs were mostly OPLL specific. In order to decipher the regulation network of these OPLL specific miRNAs, we integrated mRNA expression profiling data with miRNA sequencing data. Through computational approaches, we showed the pivotal roles of these OPLL specific miRNAs in heterotopic ossification of longitudinal ligament by discovering highly correlated miRNA/mRNA pairs that associated with skeletal system development, collagen fibril organization, and extracellular matrix organization. The results of which provide strong evidence that the miRNA regulatory networks we established may indeed play vital roles in OPLL onset and progression. To date, this is the first systematic analysis of the micronome in OPLL, and thus may provide valuable resources in finding novel treatment and diagnostic targets of OPLL.

• Authors: Chen Xu, Yu Chen, Hao Zhang, Yuanyuan Chen, Xiaolong Shen, Changgui Shi, Yang Liu, Wen Yuan
• Journal: Scientific reports (Sci Rep) Vol. 6 Pg. 21580 (Feb 12 2016) ISSN: 2045-2322 [Electronic] England
• PMID: 26868491 (Publication Type: Journal Article, Research Support, Non-U.S. Gov't)

Chemical References

• MicroRNAs

Topics

• Cells, Cultured
• Female
• Gene Expression Regulation
• High-Throughput Nucleotide Sequencing
• Humans
• Longitudinal Ligaments (metabolism, pathology)
• Male
• MicroRNAs (biosynthesis)
• Ossification of Posterior Longitudinal Ligament (diagnosis, metabolism, pathology)