Abstract |
Molecular networks governing responses to targeted therapies in cancer cells are complex dynamic systems that demonstrate nonintuitive behaviors. We applied a novel computational strategy to infer probabilistic causal relationships between network components based on gene expression. We constructed a model comprised of an ensemble of networks using multidimensional data from cell line models of cell-cycle arrest caused by inhibition of MEK1/2. Through simulation of a reverse-engineered Bayesian network model, we generated predictions of G1-S transition. The model identified known components of the cell-cycle machinery, such as CCND1, CCNE2, and CDC25A, as well as revealed novel regulators of G1-S transition, IER2, TRIB1, TRIM27. Experimental validation of model predictions confirmed 10 of 12 predicted genes to have a role in G1-S progression. Further analysis showed that TRIB1 regulated the cyclin D1 promoter via NFκB and AP-1 sites and sensitized cells to TRAIL-induced apoptosis. In clinical specimens of breast cancer, TRIB1 levels correlated with expression of NFκB and its target genes ( IL8, CSF2), and TRIB1 copy number and expression were predictive of clinical outcome. Together, our results establish a critical role of TRIB1 in cell cycle and survival that is mediated via the modulation of NFκB signaling. Cancer Res; 77(7); 1575-85. ©2017 AACR.
|
Authors | Rina Gendelman, Heming Xing, Olga K Mirzoeva, Preeti Sarde, Christina Curtis, Heidi S Feiler, Paul McDonagh, Joe W Gray, Iya Khalil, W Michael Korn |
Journal | Cancer research
(Cancer Res)
Vol. 77
Issue 7
Pg. 1575-1585
(04 01 2017)
ISSN: 1538-7445 [Electronic] United States |
PMID | 28087598
(Publication Type: Journal Article)
|
Copyright | ©2017 American Association for Cancer Research. |
Chemical References |
- CCND1 protein, human
- Intracellular Signaling Peptides and Proteins
- NF-kappa B
- TRIB1 protein, human
- Cyclin D1
- Protein Serine-Threonine Kinases
- Proto-Oncogene Proteins c-akt
- Mitogen-Activated Protein Kinase Kinases
|
Topics |
- Bayes Theorem
- Breast Neoplasms
(drug therapy, genetics, pathology)
- Cell Cycle
- Cell Line, Tumor
- Cell Survival
- Cyclin D1
(genetics)
- Female
- Humans
- Intracellular Signaling Peptides and Proteins
(genetics, physiology)
- Mitogen-Activated Protein Kinase Kinases
(antagonists & inhibitors)
- NF-kappa B
(physiology)
- Phosphatidylinositol 3-Kinases
(physiology)
- Promoter Regions, Genetic
- Protein Serine-Threonine Kinases
(antagonists & inhibitors, genetics, physiology)
- Proto-Oncogene Proteins c-akt
(physiology)
- Signal Transduction
(physiology)
|