Ultradeep Sequencing for Detection of Quasispecies Variants in the Major Hydrophilic Region of Hepatitis B Virus in Indonesian Patients.

Abstract

Quasispecies of hepatitis B virus (HBV) with variations in the major hydrophilic region (MHR) of the HBV surface antigen (HBsAg) can evolve during infection, allowing HBV to evade neutralizing antibodies. These escape variants may contribute to chronic infections. In this study, we looked for MHR variants in HBV quasispecies using ultradeep sequencing and evaluated the relationship between these variants and clinical manifestations in infected patients. We enrolled 30 Indonesian patients with hepatitis B infection (11 with chronic hepatitis and 19 with advanced liver disease). The most common subgenotype/subtype of HBV was B3/adw (97%). The HBsAg titer was lower in patients with advanced liver disease than that in patients with chronic hepatitis. The MHR variants were grouped based on the percentage of the viral population affected: major, ≥20% of the total population; intermediate, 5% to <20%; and minor, 1% to <5%. The rates of MHR variation that were present in the major and intermediate viral population were significantly greater in patients with advanced liver disease than those in chronic patients. The most frequent MHR variants related to immune evasion in the major and intermediate populations were P120Q/T, T123A, P127T, Q129H/R, M133L/T, and G145R. The major population of MHR variants causing impaired of HBsAg secretion (e.g., G119R, Q129R, T140I, and G145R) was detected only in advanced liver disease patients. This is the first study to use ultradeep sequencing for the detection of MHR variants of HBV quasispecies in Indonesian patients. We found that a greater number of MHR variations was related to disease severity and reduced likelihood of HBsAg titer.

• Authors: Laura Navika Yamani, Yoshihiko Yano, Takako Utsumi, Juniastuti, Hadi Wandono, Doddy Widjanarko, Ari Triantanoe, Widya Wasityastuti, Yujiao Liang, Rina Okada, Toshihito Tanahashi, Yoshiki Murakami, Takeshi Azuma, Soetjipto, Maria Inge Lusida, Yoshitake Hayashi
• Journal: Journal of clinical microbiology (J Clin Microbiol) Vol. 53 Issue 10 Pg. 3165-75 (Oct 2015) ISSN: 1098-660X [Electronic] United States
• PMID: 26202119 (Publication Type: Journal Article, Research Support, Non-U.S. Gov't)
• Copyright: Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Chemical References

• Hepatitis B Surface Antigens

Topics

• Adult
• Aged
• Amino Acid Substitution
• Female
• Gene Frequency
• Genetic Variation
• Hepatitis B (virology)
• Hepatitis B Surface Antigens (genetics)
• Hepatitis B virus (classification, genetics, isolation & purification)
• High-Throughput Nucleotide Sequencing (methods)
• Humans
• Indonesia
• Male
• Middle Aged
• Sequence Analysis, DNA (methods)