One-step metabolomics: carbohydrates, organic and amino acids quantified in a single procedure.

Abstract

Every infant born in the US is now screened for up to 42 rare genetic disorders called "inborn errors of metabolism". The screening method is based on tandem mass spectrometry and quantifies acylcarnitines as a screen for organic acidemias and also measures amino acids. All states also perform enzymatic testing for carbohydrate disorders such as galactosemia. Because the results can be non-specific, follow-up testing of positive results is required using a more definitive method. The present report describes the "urease" method of sample preparation for inborn error screening. Crystalline urease enzyme is used to remove urea from body fluids which permits most other water-soluble metabolites to be dehydrated and derivatized for gas chromatography in a single procedure. Dehydration by evaporation in a nitrogen stream is facilitated by adding acetonitrile and methylene chloride. Then, trimethylsilylation takes place in the presence of a unique catalyst, triethylammonium trifluoroacetate. Automated injection and chromatography is followed by macro-driven custom quantification of 192 metabolites and semi-quantification of every major component using specialized libraries of mass spectra of TMS derivatized biological compounds. The analysis may be performed on the widely-used Chemstation platform using the macros and libraries available from the author. In our laboratory, over 16,000 patient samples have been analyzed using the method with a diagnostic yield of about 17%--that is, 17% of the samples results reveal findings that should be acted upon by the ordering physician. Included in these are over 180 confirmed inborn errors, of which about 38% could not have been diagnosed using previous methods.

• Authors: James D Shoemaker
• Journal: Journal of visualized experiments : JoVE (J Vis Exp) Issue 40 (Jun 25 2010) ISSN: 1940-087X [Electronic] United States
• PMID: 20613709 (Publication Type: Journal Article, Video-Audio Media)

Chemical References

• Amino Acids
• Carbohydrates
• Quaternary Ammonium Compounds
• triethylammonium cation
• Urea
• Trifluoroacetic Acid
• Urease

Topics

• Amino Acids (urine)
• Carbohydrates (urine)
• Humans
• Infant
• Mass Screening (methods)
• Metabolism, Inborn Errors (urine)
• Metabolomics (methods)
• Quaternary Ammonium Compounds (chemistry)
• Trifluoroacetic Acid (chemistry)
• Urea (urine)
• Urease (chemistry)