Comprehensive analysis of clinical prognosis and CLIC1 immune invasion in lung adenocarcinoma.

Abstract

BACKGROUND:

Chloride intracellular channel 1 (CLIC1) plays an important role in the process of cell epithelial transport, and is also involved in tumor invasion and metastasis. Due to its aberrant expression in cancer, the mechanism of action of CLIC1 in cancer has been carefully studied. In this study, we tried to investigate the relationship between CLIC1 and lung adenocarcinoma (LUAD).

METHODS:

The RNA-sequencing data and clinical information of CLIC1 in lung adenocarcinoma were collected from the the cancer genome altas (TCGA) database and analyzed with R software. Paired t test and Mann-Whitney U test were used to detect differences between LUAD tissue and adjacent normal tissue, and the pROC software package performed reactive oxygen species (ROC) curves to detect cutoff values for CLIC1. The expression of CLIC1 in normal human tissues was extracted from the human protein altas (HPA) database, and analyzed clinical proteomic tumor analysis consortium by using UALCAN programme. The relationship between CLIC1 and LUAD was explored by enrichment analysis using gene oncology and Kyoto encyclopedia of genes and genomes. The tumor immunity estimation resource (TIMER) and integrated repository portal for tumor-immune system interactions (TISIDB) databases were used to analyze the correlation between CLIC1 and LUAD immune cell infiltration. Survival analysis of CLIC1 in LUAD was assessed by the PrognoScan database.

RESULTS:

Compared with normal tissues, both mRNA (messenger Ribose Nucleic Acid) and protein of CLIC1 were overexpressed in LUAD, which was associated with shorter overall survial (OS). In addition, CLIC1 expression was in connection with some clinical-pathological characteristics like tumor node metatasis stages and lymph node metastases. What's more, CLIC1 may play a role in the immune infiltration of LUAD.

CONCLUSION:

In summary, CLIC1 is up-regulated in LUAD and is associated with tumor metastasis, tumor staging, and OS. It may be regarded as a novel marker for prognostic judgement in LUAD.

• Authors: Zhiqiang Chen, Wenmin Chen, Ruilan Huang, Daman Chen, Zhuoyao Li, Xiangjun Qi, Lingling Sun, Lizhu Lin, Zhiquan Zhang
• Journal: Medicine (Medicine (Baltimore)) Vol. 101 Issue 39 Pg. e30760 (Sep 30 2022) ISSN: 1536-5964 [Electronic] United States
• PMID: 36181109 (Publication Type: Journal Article)
• Copyright: Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc.

Chemical References

• Biomarkers, Tumor
• CLIC1 protein, human
• Chloride Channels
• RNA, Messenger
• Reactive Oxygen Species
• Ribose

Topics

• Adenocarcinoma (pathology)
• Adenocarcinoma of Lung (pathology)
• Biomarkers, Tumor (metabolism)
• Chloride Channels (genetics)
• Humans
• Lung Neoplasms (pathology)
• Prognosis
• Proteomics
• RNA, Messenger (genetics)
• Reactive Oxygen Species (metabolism)
• Ribose