A Systems Biology Approach to Reveal Putative Host-Derived Biomarkers of Periodontitis by Network Topology Characterization of MMP-REDOX/NO and Apoptosis Integrated Pathways.

Abstract

Periodontitis, a formidable global health burden, is a common chronic disease that destroys tooth-supporting tissues. Biomarkers of the early phase of this progressive disease are of utmost importance for global health. In this context, saliva represents a non-invasive biosample. By using systems biology tools, we aimed to (1) identify an integrated interactome between matrix metalloproteinase (MMP)-REDOX/nitric oxide (NO) and apoptosis upstream pathways of periodontal inflammation, and (2) characterize the attendant topological network properties to uncover putative biomarkers to be tested in saliva from patients with periodontitis. Hence, we first generated a protein-protein network model of interactions ("BIOMARK" interactome) by using the STRING 10 database, a search tool for the retrieval of interacting genes/proteins, with "Experiments" and "Databases" as input options and a confidence score of 0.400. Second, we determined the centrality values (closeness, stress, degree or connectivity, and betweenness) for the "BIOMARK" members by using the Cytoscape software. We found Ubiquitin C (UBC), Jun proto-oncogene (JUN), and matrix metalloproteinase-14 (MMP14) as the most central hub- and non-hub-bottlenecks among the 211 genes/proteins of the whole interactome. We conclude that UBC, JUN, and MMP14 are likely an optimal candidate group of host-derived biomarkers, in combination with oral pathogenic bacteria-derived proteins, for detecting periodontitis at its early phase by using salivary samples from patients. These findings therefore have broader relevance for systems medicine in global health as well.

• Authors: Fares Zeidán-Chuliá, Mervi Gürsoy, Ben-Hur Neves de Oliveira, Vural Özdemir, Eija Könönen, Ulvi K Gürsoy
• Journal: Frontiers in cellular and infection microbiology (Front Cell Infect Microbiol) Vol. 5 Pg. 102 ( 2015) ISSN: 2235-2988 [Electronic] Switzerland
• PMID: 26793622 (Publication Type: Journal Article, Research Support, Non-U.S. Gov't)

Chemical References

• Biomarkers
• MAS1 protein, human
• Proto-Oncogene Mas
• Nitric Oxide
• Matrix Metalloproteinases

Topics

• Apoptosis
• Biomarkers (analysis)
• Computational Biology
• Gene Regulatory Networks
• Humans
• Matrix Metalloproteinases (metabolism)
• Metabolic Networks and Pathways
• Nitric Oxide (metabolism)
• Oxidation-Reduction
• Periodontitis (diagnosis, pathology)
• Protein Interaction Maps
• Proto-Oncogene Mas
• Saliva (chemistry)
• Signal Transduction
• Systems Biology