A Cancer Gene Module Mining Method Based on Bio-Network of Multi-Omics Gene Groups.

Abstract

The initiation, promotion and progression of cancer are highly associated to the environment a human lives in as well as individual genetic factors. In view of the dangers to life and health caused by this abnormally complex systemic disease, many top scientific research institutions around the world have been actively carrying out research in order to discover the pathogenic mechanisms driving cancer occurrence and development. The emergence of high-throughput sequencing technology has greatly advanced oncology research and given rise to the revelation of important oncogenes and the interrelationship among them. Here, we have studied heterogeneous multi-level data within a context of integrated data, and scientifically introduced lncRNA omics data to construct multi-omics bio-network models, allowing the screening of key cancer-related gene groups. We propose a compactness clustering algorithm based on corrected cumulative rank scores, which uses the functional similarity between groups of genes as a distance measure to excavate key gene modules for abnormal regulation contained in gene groups through clustering. We also conducted a survival analysis using our results and found that our model could divide groups of different levels very well. The results also demonstrate that the integration of multi-omics biological data, key gene modules and their dysregulated gene groups can be discovered, which is crucial for cancer research.

• Authors: Chunyu Wang, Ning Zhao, Kai Sun, Ying Zhang
• Journal: Frontiers in oncology (Front Oncol) Vol. 10 Pg. 1159 ( 2020) ISSN: 2234-943X [Print] Switzerland
• PMID: 32637361 (Publication Type: Journal Article)
• Copyright: Copyright © 2020 Wang, Zhao, Sun and Zhang.