A simple and rapid genotyping assay for simultaneous detection of two ADRB2 allelic variants using fluorescence resonance energy transfer probes and melting curve analysis.

Abstract

Allelic variants at codons 16 and 27 of the beta(2)-adrenergic receptor gene (ADRB2) have shown clinical and pharmacological implications in asthma, hypertension, ischemic heart failure, diabetes, obesity, and cystic fibrosis. We have developed a simultaneous genotyping assay for the c.46A>G and c.79C>G allelic variants using hybridization probes and melting curve analysis. The assay was optimized on a panel of 30 DNA samples of known ADRB2 genotype as determined by sequencing with 100% concordance between the two techniques. Melting temperature (Tm) ranges for the different genotypes were obtained using data from three independent experiments. Single peaks for p.Arg16Arg (Tm = 57.76 degrees C +/- 0.10 degrees C) and p.Gly16Gly (Tm = 66.73 degrees C +/- 0.18 degrees C) and two melting peaks for p.Arg16Gly were obtained. Similarly, single peaks for p.Gln27Gln (Tm = 53.98 degrees C +/- 0.19 degrees C) and p.Glu27Glu (Tm = 64.93 degrees C +/- 0.16 degrees C) and two peaks for p.Gln27Glu were detected. Independent operators easily assigned genotypes in a sample set of 385 asthmatic patients. Haplotype and allele frequencies were in concordance with previously published data: Arg allele frequencies in children/adults were 0.34/0.30 in Caucasians and 0.45/0.52 in African Americans, and Gln allele frequencies were 0.58/0.52 in Caucasians and 0.82/0.84 in African Americans. Thus, the ADRB2 genotyping assay represents a highly reliable and rapid technique for routine clinical use in the simultaneous detection of ADRB2 variants.

• Authors: M Fernanda Sábato, Anne-Marie Irani, Bonny L Bukaveckas, Lawrence B Schwartz, David S Wilkinson, Andrea Ferreira-Gonzalez
• Journal: The Journal of molecular diagnostics : JMD (J Mol Diagn) Vol. 10 Issue 3 Pg. 258-64 (May 2008) ISSN: 1525-1578 [Print] United States
• PMID: 18440968 (Publication Type: Evaluation Study, Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't)

Chemical References

• DNA Probes
• Receptors, Adrenergic, beta-2

Topics

• Adult
• Black or African American
• Alleles
• Asthma (genetics)
• Child
• DNA Probes (genetics, metabolism)
• Fluorescence Resonance Energy Transfer
• Gene Frequency
• Genotype
• Humans
• Nucleic Acid Denaturation
• Polymorphism, Genetic
• Receptors, Adrenergic, beta-2 (genetics, metabolism)
• Reproducibility of Results