We purified 15,000-fold from HeLa cell nuclear extract the centromere
antigen that reacts specifically with the 17-bp sequence, designated previously as CENP-B box, in human centromeric alpha-satellite (alphoid)
DNA by a two-step procedure including an
oligonucleotide affinity column. The purified
protein was identified as the
centromere protein B (CENP-B) by its mobility on SDS-PAGE (80 kD), and reactivities to a
monoclonal antibody raised to CENP-B (bacterial fusion
protein) and to anticentromere sera from patients with
autoimmune diseases. Direct binding by CENP-B of the CENP-B box sequence in the alphoid
DNA has been proved using the purified CENP-B by
DNA mobility-shift assay, Southwestern blotting, and
DNase I protection analysis. The binding constant of the
antigen to the CENP-B box sequence is 6 x 10(8) M-1.
DNA mobility-shift assays indicated that the major complex formed between the CENP-B and the
DNA contains two
DNA molecules, suggesting the importance of the CENP-B/CENP-B box interaction in organization of higher ordered
chromatin structures in the centromere and/or kinetochore. Location of
DNA binding and dimerization domains in CENP-B was discussed based on the
DNA mobility-shift assays performed with a
protein fraction containing intact and partial cleavage products of CENP-B.