DNA topoisomerase I (Top1p) catalyzes topological changes in
DNA and is the cellular target of the
antitumor agent camptothecin (
CPT). Non-
CPT drugs that target Top1p, such as indolocarbazoles, are under clinical development. However, whether the cytotoxicity of indolocarbazoles derives from Top1p
poisoning remains unclear. To further investigate indolocarbazole mechanism,
rebeccamycin R-3 activity was examined in vitro and in yeast. Using a series of Top1p mutants, where substitution of residues around the active site
tyrosine has well-defined effects on
enzyme catalysis, we show that catalytically active,
CPT-resistant
enzymes remain sensitive to R-3. This indolocarbazole did not inhibit yeast Top1p activity, yet was effective in stabilizing Top1p-DNA complexes. Similar results were obtained with human Top1p, when Ser or His were substituted for Asn-722. The mutations altered
enzyme function and sensitivity to
CPT, yet R-3
poisoning of Top1p was unaffected. Moreover, top1delta, rad52delta yeast cells expressing human Top1p, but not catalytically inactive Top1Y723Fp, were sensitive to R-3. These data support hTop1p as the cellular target of R-3 and indicate that distinct drug-
enzyme interactions at the active site are required for efficient
poisoning by R-3 or
CPT. Furthermore, resistance to one
poison may potentiate cell sensitivity to structurally distinct compounds that also target Top1p.