Transcriptomics Analysis of Lens from Patients with Posterior Subcapsular Congenital Cataract.

Abstract

To gain insight into the aetiology of posterior subcapsular congenital cataract from the perspective of transcriptional changes, we conducted an mRNA sequencing analysis of the lenses in posterior subcapsular congenital cataract patients and in normal children. There were 1533 differentially expressed genes from 19,072 genes in the lens epithelial cells of the posterior subcapsular congenital cataract patients compared to in the normal controls at a cut-off criteria of |log2 fold change| of >1 and a p-value of <0.05, including 847 downregulated genes and 686 upregulated genes. To further narrow down the DEGs, we utilised the stricter criteria of |log2 fold change| of >1 and an FDR value of <0.05, and we identified 551 DEGs, including 97 upregulated genes and 454 downregulated genes. This study also identified 1263 differentially expressed genes of the 18,755 genes in lens cortex and nuclear fibres, including 646 downregulated genes and 617 upregulated genes. The downregulated genes in epithelial cells were significantly enriched in the structural constituent of lenses, lens development and lens fibre cell differentiation. After filtering the DEGs using the databases iSyTE and Cat-Map, several high-priority candidate genes related to posterior subcapsular congenital cataract such as GRIFIN, HTRA1 and DAPL1 were identified. The findings of our study may provide a deeper understanding of the mechanisms of posterior subcapsular congenital cataract and help in the prevention and treatment of this disease.

• Authors: Xiaolei Lin, Hongzhe Li, Tianke Yang, Xin Liu, Fan Fan, Xiyue Zhou, Yi Luo
• Journal: Genes (Genes (Basel)) Vol. 12 Issue 12 (11 27 2021) ISSN: 2073-4425 [Electronic] Switzerland
• PMID: 34946854 (Publication Type: Journal Article, Research Support, Non-U.S. Gov't)

Chemical References

• DAPL1 protein, human
• Membrane Proteins
• High-Temperature Requirement A Serine Peptidase 1
• HtrA1 protein, human

Topics

• Cataract (genetics, metabolism, pathology)
• Cell Differentiation
• Child
• Child, Preschool
• Congenital Abnormalities (genetics, metabolism, pathology)
• Gene Expression Profiling (methods)
• Gene Expression Regulation
• High-Temperature Requirement A Serine Peptidase 1 (genetics, metabolism)
• Humans
• Infant
• Lens, Crystalline (metabolism)
• Membrane Proteins (genetics, metabolism)
• Transcriptome