Rapid visual isothermal nucleic acid-based detection assay of Brucella species by polymerase spiral reaction.

Abstract

AIM:

The aim of this study was to develop polymerase spiral reaction (PSR) for rapid, sensitive and specific detection of Brucella sp.

METHODS AND RESULTS:

Polymerase spiral reaction assay was developed using specifically designed primers targeting the conserved multicopy IS711 gene of Brucella sp. The assay could be performed within 60 min at an isothermal temperature of 64°C. The lower limit of detection of PSR was 11·8 fg and conventional PCR was 1·18 pg of Brucella abortus genomic DNA. Thus, PSR was found to be 100-fold more sensitive than conventional PCR and was comparable to real-time PCR. The specificity of PSR was tested with other non-Brucella bacteria and also with some bacterial and viral pathogens causing abortions. The assay was found to be specific as it did not detect any putative pathogens other than Brucella sp. Fifty-six clinical samples suspected for brucellosis (aborted fetal stomach content) were screened with PSR to validate the applicability of the test to detect Brucella DNA. The same samples were also screened with conventional PCR and real-time PCR. Of 56 samples, 25 samples were found to be positive with both PSR as well as real-time PCR, whereas only 20 samples were found positive with conventional PCR.

CONCLUSIONS:

The results of this study indicated that the PSR assay is a simple, rapid, sensitive and specific method for the detection of Brucella sp. that may improve diagnostic potential in clinical laboratories or can be used at diagnostic laboratories with minimal infrastructure.

SIGNIFICANCE AND IMPACT OF THE STUDY:

The PSR assay, because of its simplicity and low cost, can be preferred to other molecular methods in the diagnosis of infectious diseases.

• Authors: A Das, B Kumar, S Chakravarti, C Prakash, R P Singh, V Gupta, K P Singh, R K Agrawal, V K Chaturvedi, Abhishek, G Shrinet
• Journal: Journal of applied microbiology (J Appl Microbiol) Vol. 125 Issue 3 Pg. 646-654 (Sep 2018) ISSN: 1365-2672 [Electronic] England
• PMID: 30152897 (Publication Type: Journal Article)
• Copyright: © 2018 The Society for Applied Microbiology.

Chemical References

• DNA Primers
• DNA

Topics

• Biological Assay (methods)
• Brucella (classification, genetics)
• Brucellosis (diagnosis)
• DNA (analysis)
• DNA Primers (genetics)
• Gastrointestinal Contents (chemistry)
• Humans
• Limit of Detection
• Real-Time Polymerase Chain Reaction (methods)
• Sensitivity and Specificity
• Temperature