Abstract | BACKGROUND: Plasmodium falciparum genotyping with molecular polymorphic markers is widely employed to distinguish recrudescence from re-infection in antimalarial drug efficacy monitoring programmes. However, limitations occur on agarose gel DNA measurements used to resolve the polymorphisms. Without empirical data, the current distinction of pre- and post-treatment bands, as persistent or new infection, is subjective and often varying by author. This study measures empirical tolerance limits for classifying different-sized bands as same or different alleles during MSP2 genotyping. METHODS: P. falciparum field samples from 161 volunteers were genotyped by nested PCR using polymorphic MSP2 family-specific primers. Data were analysed to determine variability of band size measurements between identical MSP2 alleles randomized into different agarose lanes. RESULTS: The mean (95% CI) paired difference in band size between identical alleles was 9.8 bp (1.48 - 18.16 bp, p = 0.022) for 3D7/IC and 2.54 (-3.04 - 8.05 bp, p = 0.362) for FC27. Based on these findings, pre- and post-treatment samples with 3D7/IC alleles showing less than 18 bp difference corresponded to recrudescence, with 95% confidence, while greater difference indicated new infection. FC27 allele differences were much narrower. For both 3D7/IC and FC27 amplicon, allele detection sensitivity was significantly higher with 13 mul compared to 20 mul or 30 mul lane loading volumes. CONCLUSION: During MSP genotyping, it is useful to standardize classifications against measurement of background variability on identical alleles, in order to obtain reliable findings. It is critical to use a fixed optimal lane loading volume for constant allele patency, to avoid the disappearance or false appearance of new infection.
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Authors | Petrica Rouse, Mtawa Ap Mkulama, Philip E Thuma, Sungano Mharakurwa |
Journal | Malaria journal
(Malar J)
Vol. 7
Pg. 185
(Sep 23 2008)
ISSN: 1475-2875 [Electronic] England |
PMID | 18811949
(Publication Type: Journal Article, Research Support, Non-U.S. Gov't)
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Chemical References |
- Antigens, Protozoan
- Protozoan Proteins
- merozoite surface protein 2, Plasmodium
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Topics |
- Adolescent
- Adult
- Animals
- Antigens, Protozoan
(genetics)
- Child
- Child, Preschool
- DNA Fingerprinting
(standards)
- Electrophoresis, Agar Gel
(standards)
- Female
- Genotype
- Humans
- Malaria, Falciparum
(parasitology)
- Male
- Middle Aged
- Plasmodium falciparum
(classification, genetics, isolation & purification)
- Polymerase Chain Reaction
(methods)
- Polymorphism, Genetic
- Protozoan Proteins
(genetics)
- Recurrence
- Reproducibility of Results
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