Genetic analysis of hsCRP in American Indians: The Strong Heart Family Study.

Abstract

BACKGROUND:

Increased serum levels of C-reactive protein (CRP), an important component of the innate immune response, are associated with increased risk of cardiovascular disease (CVD). Multiple single nucleotide polymorphisms (SNP) have been identified which are associated with CRP levels, and Mendelian randomization studies have shown a positive association between SNPs increasing CRP expression and risk of colon cancer (but thus far not CVD). The effects of individual genetic variants often interact with the genetic background of a population and hence we sought to resolve the genetic determinants of serum CRP in a number of American Indian populations.

METHODS:

The Strong Heart Family Study (SHFS) has serum CRP measurements from 2428 tribal members, recruited as large families from three regions of the United States. Microsatellite markers and MetaboChip defined SNP genotypes were incorporated into variance components, decomposition-based linkage and association analyses.

RESULTS:

CRP levels exhibited significant heritability (h2 = 0.33 ± 0.05, p<1.3 X 10-20). A locus on chromosome (chr) 6, near marker D6S281 (approximately at 169.6 Mb, GRCh38/hg38) showed suggestive linkage (LOD = 1.9) to CRP levels. No individual SNPs were found associated with CRP levels after Bonferroni adjustment for multiple testing (threshold <7.77 x 10-7), however, we found nominal associations, many of which replicate previous findings at the CRP, HNF1A and 7 other loci. In addition, we report association of 46 SNPs located at 7 novel loci on chromosomes 2, 5, 6(2 loci), 9, 10 and 17, with an average of 15.3 Kb between SNPs and all with p-values less than 7.2 X 10-4.

CONCLUSION:

In agreement with evidence from other populations, these data show CRP serum levels are under considerable genetic influence; and include loci, such as near CRP and other genes, that replicate results from other ethnic groups. These findings also suggest possible novel loci on chr 6 and other chromosomes that warrant further investigation.

• Authors: Lyle G Best, Poojitha Balakrishnan, Shelley A Cole, Karin Haack, Jonathan M Kocarnik, Nathan Pankratz, Matthew Z Anderson, Nora Franceschini, Barbara V Howard, Elisa T Lee, Kari E North, Jason G Umans, Joseph M Yracheta, Ana Navas-Acien, V Saroja Voruganti
• Journal: PloS one (PLoS One) Vol. 14 Issue 10 Pg. e0223574 ( 2019) ISSN: 1932-6203 [Electronic] United States
• PMID: 31622379 (Publication Type: Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't)

Chemical References

• Biomarkers
• C-Reactive Protein

Topics

• Alleles
• Biomarkers (blood)
• C-Reactive Protein (genetics)
• Female
• Genetic Linkage
• Genetic Predisposition to Disease
• Genetic Variation
• Genetics, Population
• Genome-Wide Association Study
• Genotype
• Humans
• Indians, North American (genetics)
• Male
• Polymorphism, Single Nucleotide