Bioengineering silicon quantum dot theranostics using a network analysis of metabolomic and proteomic data in cardiac ischemia.

Abstract

Metabolomic profiling is ideally suited for the analysis of cardiac metabolism in healthy and diseased states. Here, we show that systematic discovery of biomarkers of ischemic preconditioning using metabolomics can be translated to potential nanotheranostics. Thirty-three patients underwent percutaneous coronary intervention (PCI) after myocardial infarction. Blood was sampled from catheters in the coronary sinus, aorta and femoral vein before coronary occlusion and 20 minutes after one minute of coronary occlusion. Plasma was analysed using GC-MS metabolomics and iTRAQ LC-MS/MS proteomics. Proteins and metabolites were mapped into the Metacore network database (GeneGo, MI, USA) to establish functional relevance. Expression of 13 proteins was significantly different (p<0.05) as a result of PCI. Included amongst these was CD44, a cell surface marker of reperfusion injury. Thirty-eight metabolites were identified using a targeted approach. Using PCA, 42% of their variance was accounted for by 21 metabolites. Multiple metabolic pathways and potential biomarkers of cardiac ischemia, reperfusion and preconditioning were identified. CD44, a marker of reperfusion injury, and myristic acid, a potential preconditioning agent, were incorporated into a nanotheranostic that may be useful for cardiovascular applications. Integrating biomarker discovery techniques into rationally designed nanoconstructs may lead to improvements in disease-specific diagnosis and treatment.

• Authors: Folarin Erogbogbo, Jasmine May, Mark Swihart, Paras N Prasad, Katie Smart, Seif El Jack, Dariusz Korcyk, Mark Webster, Ralph Stewart, Irene Zeng, Mia Jullig, Katherine Bakeev, Michelle Jamieson, Nikolas Kasabov, Banu Gopalan, Linda Liang, Raphael Hu, Stefan Schliebs, Silas Villas-Boas, Patrick Gladding
• Journal: Theranostics (Theranostics) Vol. 3 Issue 9 Pg. 719-28 ( 2013) ISSN: 1838-7640 [Electronic] Australia
• PMID: 24019856 (Publication Type: Journal Article, Research Support, Non-U.S. Gov't)

Chemical References

• Biomarkers
• Proteome
• Silicon

Topics

• Bioengineering (methods)
• Biomarkers (blood)
• Chromatography, Liquid
• Gas Chromatography-Mass Spectrometry
• Humans
• Metabolome
• Myocardial Ischemia (diagnosis, physiopathology)
• Plasma (chemistry)
• Proteome
• Quantum Dots (chemistry, metabolism)
• Silicon (chemistry, metabolism)
• Tandem Mass Spectrometry