Computational analysis of folding and mutation properties of C5 domain of myosin binding protein C.

Abstract

Thermal folding molecular dynamics simulations of the domain C5 of Myosin binding protein C were performed using a native-centric model to study the role of three mutations related to Familial Hypertrophic Cardiomyopathy. Mutation of Asn755 causes the largest shift of the folding temperature, and the residue is located in the CFGA' beta-sheet featuring the highest phi-values. The mutation thus appears to reduce the thermodynamic stability in agreement with experimental data. The mutations on Arg654 and Arg668, conversely, cause little change in the folding temperature and they reside in the low phi-value BDE beta-sheet, so that their pathological role cannot be related to impairment of the folding process but possibly to the binding with target molecules. As the typical signature of Domain C5 is the presence of a longer and destibilizing CD-loop with respect to the other Ig-like domains, we completed the work with a bioinformatic analysis of this loop showing a high density of negative charge and low hydrophobicity. This indicates the CD-loop as a natively unfolded sequence with a likely coupling between folding and ligand binding.

• Authors: Carlo Guardiani, Fabio Cecconi, Roberto Livi
• Journal: Proteins (Proteins) Vol. 70 Issue 4 Pg. 1313-22 (Mar 2008) ISSN: 1097-0134 [Electronic] United States
• PMID: 17876814 (Publication Type: Journal Article)
• Copyright: 2007 Wiley-Liss, Inc.

Chemical References

• Carrier Proteins
• myosin-binding protein C

Topics

• Carrier Proteins (chemistry, genetics)
• Computational Biology
• Humans
• Hydrophobic and Hydrophilic Interactions
• Mutation
• Protein Folding
• Protein Structure, Tertiary
• Static Electricity