Interactions among different genetic loci in age-related macular degeneration.

Abstract

PURPOSE:

To evaluate the possible synergistic effect of at risk genotypes of ARMS2/LOC387715 (A69S), DNA repair SMUG1 rs3087404, CCL2-2518, C3 (R102G), CFH Y402H, complement factor B (L9H), and complement factor I (CFI) (G119R) in advanced age-related macular degeneration compared to those of healthy controls. Elucidation of synergistic effects between different genetic loci may clarify their pathogenetic pathways.

METHODS:

We calculated relative excess risk due to interaction (RERI), attributable proportion due to interaction (AP), and synergy index (S) to estimate the additive or supra-additive effects of the mentioned genotypes.

RESULTS:

ARMS2-CFH [RERI = 4.78 (95% CI 2.17-10.61), AP = 0.65 (95% CI 0.33-0.83), S = 4.11 (95% CI 1.40-12.06)], and CFH-C3 combinations [RERI = 2.71 (95% CI 0.04-7.01) AP = 0.47 (95% CI -0.03-0.7) S = 2.30 (95%CI 0.97-5.45)] have the most significant levels of synergism and C3-CFI combination [RERI = -1.65 (95%CI -4.34-0.06), AP = -0.92(95%CI -3.09 - -0.09), S = 0.32 (95%CI 0.09 = 1.20)] has the most significant level of antagonism.

CONCLUSION:

Among different genotype combinations ARMS2-CFH and CFH-C3 combinations have the most significant levels of synergism and C3-CFI combination has the most significant level of antagonism in AMD patients.

• Authors: Mortaza Bonyadi, Mohammad Hossein Jabbarpoor Bonyadi, Mehdi Yaseri, Masoud Soheilian
• Journal: Ophthalmic genetics (Ophthalmic Genet) Vol. 39 Issue 2 Pg. 189-193 (04 2018) ISSN: 1744-5094 [Electronic] England
• PMID: 29087762 (Publication Type: Journal Article)

Chemical References

• ARMS2 protein, human
• CCL2 protein, human
• Chemokine CCL2
• Complement C3
• Eye Proteins
• Proteins
• Complement Factor H
• SMUG1 protein, human
• Uracil-DNA Glycosidase
• Complement Factor I
• Complement Factor B

Topics

• Aged
• Case-Control Studies
• Chemokine CCL2 (genetics)
• Complement C3 (genetics)
• Complement Factor B (genetics)
• Complement Factor H (genetics)
• Complement Factor I (genetics)
• Eye Proteins (genetics)
• Female
• Gene Frequency
• Genetic Loci (genetics)
• Genotype
• Humans
• Macular Degeneration (genetics)
• Male
• Middle Aged
• Polymorphism, Single Nucleotide
• Proteins (genetics)
• Uracil-DNA Glycosidase (genetics)