Abstract | PURPOSE: To identify the causative mutation of canine progressive retinal atrophy (PRA) segregating as an adult onset autosomal recessive disorder in the Basenji breed of dog. METHODS: Basenji dogs were ascertained for the PRA phenotype by clinical ophthalmoscopic examination. Blood samples from six affected cases and three nonaffected controls were collected, and DNA extraction was used for a genome-wide association study using the canine HD Illumina single nucleotide polymorphism (SNP) array and PLINK. Positional candidate genes identified within the peak association signal region were evaluated. RESULTS: The highest -Log10(P) value of 4.65 was obtained for 12 single nucleotide polymorphisms on three chromosomes. Homozygosity and linkage disequilibrium analyses favored one chromosome, CFA25, and screening of the S- antigen (SAG) gene identified a non-stop mutation (c.1216T>C), which would result in the addition of 25 amino acids (p.*405Rext*25). CONCLUSIONS:
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Authors | Orly Goldstein, Julie Ann Jordan, Gustavo D Aguirre, Gregory M Acland |
Journal | Molecular vision
(Mol Vis)
Vol. 19
Pg. 1871-84
( 2013)
ISSN: 1090-0535 [Electronic] United States |
PMID | 24019744
(Publication Type: Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't)
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Chemical References |
- Arrestin
- Codon, Nonsense
- RNA, Messenger
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Topics |
- Amino Acid Sequence
- Animals
- Arrestin
(chemistry, genetics)
- Base Sequence
- Case-Control Studies
- Codon, Nonsense
(genetics)
- Dogs
- Female
- Fundus Oculi
- Genetic Predisposition to Disease
- Genome-Wide Association Study
- Homozygote
- Male
- Molecular Sequence Data
- Mutation
(genetics)
- Pedigree
- Phenotype
- Polymorphism, Single Nucleotide
(genetics)
- RNA, Messenger
(genetics, metabolism)
- Retinal Degeneration
(genetics, veterinary)
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