A
reagent panel containing ten 4-substituted
4-nitrophenyl α-D-sialosides and a second panel of the corresponding
sialic acid glycals were synthesized and used to probe the inhibition mechanism for two neuraminidases, the N2
enzyme from
influenza type A virus and the
enzyme from Micromonospora viridifaciens. For the viral
enzyme the logarithm of the inhibition constant (Ki) correlated with neither the logarithm of the catalytic efficiency (kcat/Km) nor catalytic proficiency (kcat/Km kun). These linear free energy relationship data support the notion that these inhibitors, which include the therapeutic agent
Relenza, are not transition state mimics for the
enzyme-catalyzed hydrolysis reaction. Moreover, for the
influenza enzyme, a correlation (slope, 0.80 ± 0.08) is observed between the logarithms of the inhibition (Ki) and Michaelis (Km) constants. We conclude that the free energy for
Relenza binding to the
influenza enzyme mimics the
enzyme-substrate interactions at the Michaelis complex. Thus, an
influenza mutational response to a 4-substituted
sialic acid glycal inhibitor can weaken the interactions between the inhibitor and the viral
neuraminidase without a concomitant decrease in free energy of binding for the substrate at the
enzyme-catalyzed hydrolysis transition state. The current findings make it clear that new structural motifs and/or substitution patterns need to be developed in the search for a bona fide
influenza viral
neuraminidase transition state analogue inhibitor.