The presence of Cucumber mosaic virus (CMV)
satellite RNA dramatically changes symptoms on some hosts. A
satellite RNA present in a strain of CMV (PepY-CMV) that induced
chlorosis in pepper (Capsicum annuum) was shown to induce
chlorosis in pepper in combination with another strain (Fny-CMV) that by itself induced a green mosaic symptom. The location of sequences within the PepY
satellite RNA (PepY-satRNA) of CMV that conferred the ability to induce
chlorosis on pepper plants were analyzed by exchanging sequence domains between
cDNA clones of PepY-satRNA and an attenuated mosaic
satellite RNA (Paf-satRNA), as well as site-directed mutagenesis of various clusters of the 22-nt sequence differences between the two
satellite RNAs in the delimited central domain. The symptoms induced by site-directed mutants of PepY-satRNA and Paf-satRNA in the presence of Fny-CMV demonstrated an insertion within PepY-satRNA of 11 nt at positions 86-96 relative to Paf-satRNA determined the
chlorosis-inducing phenotype. Within the
chlorosis-inducing domain, deletion of
nucleotides did not affect the satRNA replication but abolished the ability of PepY-satRNA to elicit
chlorosis symptom. Conversely, a mutant
satellite RNA derived from Paf-satRNA in which eleven
nucleotides were inserted indicated that sequences of 11
nucleotides were found to be sufficient for
chlorosis induction in pepper.