Recent genome-wide screens have highlighted an important role for
transportin 3 in human immunodeficiency virus type 1 (HIV-1)
infection and preintegration complex (PIC) nuclear import. Moreover,
HIV-1 integrase interacted with recombinant
transportin 3
protein under conditions whereby Moloney murine leukemia virus (MLV)
integrase failed to do so, suggesting that
integrase-
transportin 3 interactions might underscore active retroviral PIC nuclear import. Here we correlate infectivity defects in
transportin 3 knockdown cells with in vitro protein binding affinities for an expanded set of retroviruses that include simian immunodeficiency virus (SIV), bovine immunodeficiency virus (BIV), equine infectious anemia virus (EIAV), feline immunodeficiency virus (FIV), and Rous sarcoma virus (RSV) to critically address the role of
integrase-
transportin 3 interactions in
viral infection. Lentiviruses, with the exception of FIV, display a requirement for
transportin 3 in comparison to MLV and RSV, yielding an
infection-based dependency ranking of SIV > HIV-1 > BIV and EIAV > MLV, RSV, and FIV. In vitro pulldown and surface plasmon resonance assays, in contrast, define a notably different
integrase-
transportin 3 binding hierarchy: FIV, HIV-1, and BIV > SIV and MLV > EIAV. Our results therefore fail to support a critical role for
integrase binding in dictating
transportin 3 dependency during
retrovirus infection. In addition to
integrase, capsid has been highlighted as a retroviral nuclear import determinant. Accordingly, MLV/HIV-1 chimera viruses pinpoint the genetic determinant of sensitization to
transportin 3 knockdown to the HIV-1
capsid protein. We therefore conclude that capsid, not
integrase, is the dominant viral factor that dictates
transportin 3 dependency during HIV-1
infection.