Abstract |
To identify proteins that are involved in RNA degradation and processing in Halobacterium sp. NRC-1, we purified proteins with RNA-degrading activity by classical biochemical techniques. One of these proteins showed strong homology to the eukaryotic initiation factor 5A (eIF-5A) and was accordingly named archaeal initiation factor 5A (aIF-5A). Eukaryotic IF-5A is known to be involved in mRNA turnover and to bind RNA. Hypusination of eIF-5A is required for sequence-specific binding of RNA. This unique post-translational modification is restricted to Eukarya and Archaea. The exact function of eIF-5A in RNA turnover remained obscure. Here we show for the first time that aIF-5A from Halobacterium sp. NRC-1 exhibits RNA cleavage activity, preferentially cleaving adjacent to A nucleotides. Detectable RNA binding could be shown for aIF-5A purified from Halobacterium sp. NRC-1 but not from Escherichia coli, while both proteins possess RNA cleavage activity, indicating that hypusination of aIF-5A is required for RNA binding but not for its RNA cleavage activity. Furthermore, we show that the hypusinated form of eIF-5A also shows RNase activity while the unmodified protein does not. Charged amino acids in the N-terminal domain of aIF-5A as well as in the C-terminal domain, which is highly similar to the cold shock protein A (CspA), an RNA chaperone of E. coli, are important for RNA cleavage activity. Moreover our results reveal that activity of aIF-5A depends on its oligomeric state.
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Authors | Steffen Wagner, Gabriele Klug |
Journal | The Journal of biological chemistry
(J Biol Chem)
Vol. 282
Issue 19
Pg. 13966-76
(May 11 2007)
ISSN: 0021-9258 [Print] United States |
PMID | 17369252
(Publication Type: Comparative Study, Journal Article, Research Support, Non-U.S. Gov't)
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Chemical References |
- Archaeal Proteins
- Ligands
- Peptide Initiation Factors
- RNA, Archaeal
- RNA, Messenger
- RNA-Binding Proteins
- hypusine
- Ribonucleases
- Lysine
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Topics |
- Amino Acid Sequence
- Archaeal Proteins
(genetics, metabolism)
- Base Sequence
- Cells, Cultured
- Eukaryotic Cells
- Genetic Vectors
- Halobacterium
(genetics, growth & development, metabolism)
- Ligands
- Lysine
(analogs & derivatives, metabolism)
- Molecular Sequence Data
- Nucleic Acid Conformation
- Peptide Initiation Factors
(genetics, metabolism)
- Protein Processing, Post-Translational
- RNA, Archaeal
(genetics, metabolism)
- RNA, Messenger
(genetics, metabolism)
- RNA-Binding Proteins
(genetics, metabolism)
- Ribonucleases
(genetics, metabolism)
- Sequence Homology, Nucleic Acid
- Eukaryotic Translation Initiation Factor 5A
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