Cyclin K and the closely related
cyclins T1, T2a, and T2b interact with
cyclin-dependent kinase 9 (CDK9) forming multiple nuclear complexes, referred to collectively as
positive transcription elongation factor b (
P-TEFb). Through phosphorylation of the C-terminal domain of the
RNA polymerase II largest subunit, distinct
P-TEFb species regulate the transcriptional elongation of specific genes that play central roles in human physiology and disease development, including
cardiac hypertrophy and human immunodeficiency virus-1 pathogenesis. We have determined the crystal structure of human
cyclin K (residues 11-267) at 1.5 A resolution, which represents the first atomic structure of a
P-TEFb subunit. The
cyclin K fold comprises two typical
cyclin boxes with two short helices preceding the N-terminal box. A prominent feature of
cyclin K is an additional helix (H4a) in the first
cyclin box that obstructs the binding pocket for the cell-cycle inhibitor p27(Kip1). Modeling of CDK9 bound to
cyclin K provides insights into the structural determinants underlying the formation and regulation of this complex. A homology model of human
cyclin T1 generated using the
cyclin K structure as a template reveals that the two
proteins have similar structures, as expected from their high level of sequence identity. Nevertheless, their CDK9-interacting surfaces display significant structural differences, which could potentially be exploited for the design of
cyclin-targeted inhibitors of the CDK9-cyclin K and CDK9-cyclin T1 complexes.