The association of single nucleotide polymorphisms in the 5'-regulatory region of the lumican gene with susceptibility to high myopia in Taiwan.

Abstract

PURPOSE:

To study the relationships between single nucleotide polymorphisms (SNPs) of lumican, decorin, and DSPG3 genes and high myopia.

METHODS:

One hundred and twenty adult patients with high myopia (< -10.0 D) and 137 controls were used to study the relationships between the decorin, lumican, and DSPG genes and high myopia. All subjects were free of ocular diseases, other than myopia, as well as of other systemic genetic diseases. Genotyping was performed by direct sequencing after PCR amplification of chromosomal DNA. Allele frequencies were tested for Hardy-Weinberg disequilibrium. The chi(2) or Fisher test was conducted to investigate the genotypic and allelic distribution between the high myopia and control groups.

RESULTS:

The genotyping success rate was 100%. Univariate analysis revealed significant differences between patients and control subjects with respect to one of the SNPs (rs3759223, C->T) of the lumican gene, with a p value of 0.000283. There was no significant relationship between other SNPs of lumican, decorin, and DSPG genes and high myopia.

CONCLUSIONS:

Our results indicate that an SNP (rs3759223), which is located in the promoter region of the lumican gene, may be worth further investigation to determine its association with development of high myopia.

• Authors: I-Jong Wang, Ting-Hsuan Chiang, Yung-Feng Shih, Chuhsing Kate Hsiao, Shao-Chun Lu, Yi-Chih Hou, Luke Long-Kung Lin
• Journal: Molecular vision (Mol Vis) Vol. 12 Pg. 852-7 (Aug 04 2006) ISSN: 1090-0535 [Electronic] United States
• PMID: 16902402 (Publication Type: Journal Article, Research Support, Non-U.S. Gov't)

Chemical References

• Chondroitin Sulfate Proteoglycans
• DCN protein, human
• Decorin
• EPYC protein, human
• Extracellular Matrix Proteins
• LUM protein, human
• Lumican
• Proteoglycans
• Small Leucine-Rich Proteoglycans
• Keratan Sulfate

Topics

• 5' Flanking Region
• Adult
• Asian People (genetics)
• Base Sequence
• Case-Control Studies
• Chondroitin Sulfate Proteoglycans (genetics)
• Decorin
• Extracellular Matrix Proteins (genetics)
• Female
• Genetic Predisposition to Disease
• Genotype
• Humans
• Keratan Sulfate (genetics)
• Lumican
• Male
• Middle Aged
• Molecular Sequence Data
• Myopia (genetics, physiopathology)
• Polymorphism, Single Nucleotide
• Promoter Regions, Genetic
• Proteoglycans (genetics)
• Severity of Illness Index
• Small Leucine-Rich Proteoglycans
• Taiwan