Inhibitors of the G(2) DNA damage checkpoint can selectively sensitize
cancer cells with mutated p53 to killing by
DNA-damaging agents.
Isogranulatimide is a G(2) checkpoint inhibitor containing a unique
indole/
maleimide/
imidazole skeleton identified in a phenotypic cell-based screen; however, the mechanism of action of
isogranulatimide is unknown. Using natural and synthetic
isogranulatimide analogues, we show that the
imide nitrogen and a basic
nitrogen at position 14 or 15 in the
imidazole ring are important for checkpoint inhibition.
Isogranulatimide shows structural resemblance to the aglycon of
UCN-01, a potent bisindolemaleimide inhibitor of
protein kinase C beta (IC(50), 0.001 micromol/L) and of the checkpoint
kinase Chk1 (IC(50), 0.007 micromol/L). In vitro
kinase assays show that
isogranulatimide inhibits Chk1 (IC(50), 0.1 micromol/L) but not
protein kinase C beta. Of 13 additional
protein kinases tested,
isogranulatimide significantly inhibits only
glycogen synthase kinase-3beta (IC(50), 0.5 micromol/L). We determined the crystal structure of the Chk1 catalytic domain complexed with
isogranulatimide. Like
UCN-01,
isogranulatimide binds in the
ATP-binding pocket of Chk1 and hydrogen bonds with the backbone carbonyl
oxygen of Glu(85) and the
amide nitrogen of Cys(87). Unlike
UCN-01, the basic N15 of
isogranulatimide interacts with Glu(17), causing a conformation change in the
kinase glycine-rich loop that may contribute importantly to inhibition. The mechanism by which
isogranulatimide inhibits Chk1 and its favorable
kinase selectivity profile make it a promising candidate for modulating checkpoint responses in
tumors for therapeutic benefit.