Omphalocele is a congenital anomaly with substantial morbidity. Rieger syndrome, an autosomal dominant disorder, is characterized by
craniofacial abnormalities and abdominal wall defects. PITX2 mutations are etiologic in >40% of cases of Rieger syndrome. We demonstrate that the birth prevalence of
omphalocele is significantly higher in Rieger syndrome than in the general population, with
omphaloceles found in 0.03% in the Iowa newborn population and 4.3% of patients with Rieger syndrome. Our objective was to screen coding and conserved non-coding regions of PITX2 for mutations in 209 patients with
omphalocele. We identified remarkable evolutionarily conserved regions by comparing the
3'UTR of Pitx2 in 13 vertebrate and 3 invertebrate species. No mutations changing the amino acid sequence were found within the
omphalocele population. In one case of
omphalocele with VATER-like additional anomalies, a three
nucleotide deletion was found in the
3'UTR. This deletion was not seen in 1,186 controls. Also in the
3'UTR, we identified a single nucleotide polymorphism at a highly conserved residue. Our findings suggest additional studies of PITX2 conserved regions will be valuable. We also screened the
omphalocele cases for mutations in exon 5 of the gene FLNA. Mutations in FLNA have been shown to cause a broad range of congenital malformations, including
otopalatodigital syndrome type 2 in which a missense mutation occurring in exon 5 of FLNA results in
omphalocele as part of the phenotype. We did not find any mutations in exon 5 of FLNA in 179
omphalocele cases studied.