Abstract |
This study further defines genetic susceptibility to JIA in the region centromeric to HLA-DRB1. DNA from 234 Finnish JIA nuclear families and 639 elderly Finnish control individuals was genotyped for five functional SNPs within the TAP2 and TAP1 loci ( approximately 200 kb centromeric of HLA-DRB1). Subsets of the controls (186) and patients (145) that had been previously typed for HLA-DRB1 were also genotyped by sequence for the HLA-DPB1 locus. Case/control and transmission disequilibrium test (TDT) methods revealed an association with the DPB1(*)030101 allele for JIA (OR 2.3, 95% CI 1.5-3.5). Notably, a detailed haplotypic analysis of the TAP2/TAP1 loci and their interaction with the HLA-DPB1(*)030101 and DRB1(*)08 and (*)11 alleles showed a variety of over-represented and under-represented TAP2/TAP1 haplotypes not evident in the single marker analysis. The strongest effect was observed in the polyarticular RF negative JIA subgroup for the 2-2-1-2-1 TAP2/TAP1 haplotype (TAP2B and TAP1A alleles) which showed an independent effect from both DRB1(*)08 and (*)11 (P<0.000003) and DPB1(*)030101 (P=0.02). We have provided evidence that the extended haplotypes (including HLA-DRB1, TAP2/TAP1, and HLA-DPB1) of pauciarticular and polyarticular RF negative disease are distinct. This observation may have implications for functional etiological differences between the pauciarticular and polyarticular JIA patients.
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Authors | J A Runstadler, H Säilä, A Savolainen, M Leirisalo-Repo, K Aho, E Tuomilehto-Wolf, J Tuomilehto, M F Seldin |
Journal | Genes and immunity
(Genes Immun)
Vol. 5
Issue 7
Pg. 562-71
(Nov 2004)
ISSN: 1466-4879 [Print] England |
PMID | 15343265
(Publication Type: Comparative Study, Journal Article, Research Support, Non-U.S. Gov't, Research Support, U.S. Gov't, P.H.S.)
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Chemical References |
- ATP Binding Cassette Transporter, Subfamily B, Member 2
- ATP Binding Cassette Transporter, Subfamily B, Member 3
- ATP-Binding Cassette Transporters
- HLA-DP Antigens
- HLA-DP beta-Chains
- HLA-DPB1 antigen
- HLA-DR Antigens
- HLA-DRB1 Chains
- TAP1 protein, human
- TAP2 protein, human
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Topics |
- ATP Binding Cassette Transporter, Subfamily B, Member 2
- ATP Binding Cassette Transporter, Subfamily B, Member 3
- ATP-Binding Cassette Transporters
(genetics)
- Aged
- Arthritis, Juvenile
(genetics)
- Case-Control Studies
- Chi-Square Distribution
- Child
- Child, Preschool
- Confidence Intervals
- Female
- Finland
- HLA-DP Antigens
(genetics)
- HLA-DP beta-Chains
- HLA-DR Antigens
(genetics)
- HLA-DRB1 Chains
- Haplotypes
(genetics)
- Humans
- Major Histocompatibility Complex
(genetics)
- Male
- Odds Ratio
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