A polymorphism in the human UGRP1 gene promoter that regulates transcription is associated with an increased risk of asthma.

Abstract

Several traits associated with asthma phenotypes, such as high total serum immunoglobulin E and bronchial hyperresponsiveness, have been linked by numerous genome-screen studies and linkage analyses to markers on human chromosome 5q31-q34. In the present article, we describe UGRP1 (encoding uteroglobin-related protein 1) as one of asthma-susceptibility genes that is located on chromosome 5q31-q32. UGRP1 is a homodimeric secretory protein of 17 kDa and is expressed only in lung and trachea. The G --> A polymorphism was identified at -112 bp in the human UGRP1 gene promoter. The -112A allele is responsible for a 24% reduction in the promoter activity in relation to the -112G allele, as examined by transfection analysis. Electrophoretic mobility-shift analysis revealed that an unknown nuclear factor binds to the region around -112 bp. The binding affinity with the -112A oligonucleotide was reduced by approximately one half, as compared with the -112G oligonucleotide. In a case-control study using 169 Japanese individuals (84 patients with asthma and 85 healthy control individuals), those with a -112A allele (G/A or A/A) were 4.1 times more likely to have asthma than were those with the wild-type allele (G/G).

• Authors: Tomoaki Niimi, Mitsuru Munakata, Catherine L Keck-Waggoner, Nicholas C Popescu, Roy C Levitt, Michie Hisada, Shioko Kimura
• Journal: American journal of human genetics (Am J Hum Genet) Vol. 70 Issue 3 Pg. 718-25 (Mar 2002) ISSN: 0002-9297 [Print] United States
• PMID: 11813133 (Publication Type: Journal Article)

Chemical References

• Carrier Proteins
• DNA-Binding Proteins
• Nuclear Proteins
• SCGB3A2 protein, human
• Secretoglobins
• Transcription Factors
• Immunoglobulin E
• DNA
• Uteroglobin

Topics

• Alleles
• Asthma (genetics, immunology)
• Base Sequence
• Carrier Proteins
• Case-Control Studies
• Chromosomes, Human, Pair 5 (genetics)
• DNA (genetics, metabolism)
• DNA-Binding Proteins (metabolism)
• Electrophoretic Mobility Shift Assay
• Exons (genetics)
• Gene Expression Regulation
• Gene Frequency
• Genetic Predisposition to Disease
• Humans
• Immunoglobulin E (blood)
• In Situ Hybridization, Fluorescence
• Introns (genetics)
• Japan
• Molecular Sequence Data
• Nuclear Proteins (metabolism)
• Polymorphism, Genetic (genetics)
• Promoter Regions, Genetic (genetics)
• Secretoglobins
• Substrate Specificity
• Transcription Factors (genetics)
• Transcription, Genetic (genetics)
• Uteroglobin