Carbohydrates are ideally suited for molecular recognition. By varying the stereochemistry of the
hydroxyl substituents, the simple six-
carbon, six-
oxygen pyranose ring can exist as 10 different molecules. With the further addition of simple chemical changes, the potential for generating distinct molecular recognition surfaces far exceeds that of
amino acids. This ability to control and change the stereochemistry of the
hydroxyl substituents is very important in biology.
Epimerases can be found in animals, plants and microorganisms where they participate in important metabolic pathways such as the Leloir pathway, which involves the conversion of
galactose to
glucose-1-phosphate. Bacterial
epimerases are involved in the production of complex
carbohydrate polymers that are used in their cell walls and envelopes and are recognised as potential therapeutic targets for the treatment of
bacterial infection. Several distinct strategies have evolved to invert or epimerise the
hydroxyl substituents on
carbohydrates. In this review we group epimerisation by mechanism and discuss in detail the molecular basis for each group. These groups include
enzymes which epimerise by a transient keto intermediate, those that rely on a permanent keto group, those that eliminate then add a
nucleotide, those that break then reform
carbon-
carbon bonds and those that linearize and cyclize the pyranose ring. This approach highlights the quite different biochemical processes that underlie what is seemingly a simple reaction. What this review shows is that each position on the
carbohydrate can be epimerised and that epimerisation is found in all organisms.