HOMEPRODUCTSCOMPANYCONTACTFAQResearchDictionaryPharmaSign Up FREE or Login

Genomic-scale measurement of mRNA turnover and the mechanisms of action of the anti-cancer drug flavopiridol.

AbstractBACKGROUND:
Flavopiridol, a flavonoid currently in cancer clinical trials, inhibits cyclin-dependent kinases (CDKs) by competitively blocking their ATP-binding pocket. However, the mechanism of action of flavopiridol as an anti-cancer agent has not been fully elucidated.
RESULTS:
Using DNA microarrays, we found that flavopiridol inhibited gene expression broadly, in contrast to two other CDK inhibitors, roscovitine and 9-nitropaullone. The gene expression profile of flavopiridol closely resembled the profiles of two transcription inhibitors, actinomycin D and 5,6-dichloro-1-beta-D-ribofuranosyl-benzimidazole (DRB), suggesting that flavopiridol inhibits transcription globally. We were therefore able to use flavopiridol to measure mRNA turnover rates comprehensively and we found that different functional classes of genes had distinct distributions of mRNA turnover rates. In particular, genes encoding apoptosis regulators frequently had very short half-lives, as did several genes encoding key cell-cycle regulators. Strikingly, genes that were transcriptionally inducible were disproportionately represented in the class of genes with rapid mRNA turnover.
CONCLUSIONS:
The present genomic-scale measurement of mRNA turnover uncovered a regulatory logic that links gene function with mRNA half-life. The observation that transcriptionally inducible genes often have short mRNA half-lives demonstrates that cells have a coordinated strategy to rapidly modulate the mRNA levels of these genes. In addition, the present results suggest that flavopiridol may be more effective against types of cancer that are highly dependent on genes with unstable mRNAs.
AuthorsL T Lam, O K Pickeral, A C Peng, A Rosenwald, E M Hurt, J M Giltnane, L M Averett, H Zhao, R E Davis, M Sathyamoorthy, L M Wahl, E D Harris, J A Mikovits, A P Monks, M G Hollingshead, E A Sausville, L M Staudt
JournalGenome biology (Genome Biol) Vol. 2 Issue 10 Pg. RESEARCH0041 ( 2001) ISSN: 1474-760X [Electronic] England
PMID11597333 (Publication Type: Journal Article)
Chemical References
  • Antineoplastic Agents
  • Flavonoids
  • Nucleic Acid Synthesis Inhibitors
  • Piperidines
  • RNA, Messenger
  • RNA, Neoplasm
  • Dactinomycin
  • alvocidib
  • Dichlororibofuranosylbenzimidazole
Topics
  • Antineoplastic Agents (pharmacology)
  • Dactinomycin (pharmacology)
  • Dichlororibofuranosylbenzimidazole (pharmacology)
  • Flavonoids (pharmacology)
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic
  • Humans
  • Kinetics
  • Lymphoma, B-Cell (genetics, metabolism)
  • Lymphoma, Large B-Cell, Diffuse (genetics, metabolism)
  • Nucleic Acid Synthesis Inhibitors (pharmacology)
  • Oligonucleotide Array Sequence Analysis
  • Piperidines (pharmacology)
  • RNA Stability
  • RNA, Messenger (metabolism)
  • RNA, Neoplasm (metabolism)
  • Transcription, Genetic (drug effects)
  • Tumor Cells, Cultured

Join CureHunter, for free Research Interface BASIC access!

Take advantage of free CureHunter research engine access to explore the best drug and treatment options for any disease. Find out why thousands of doctors, pharma researchers and patient activists around the world use CureHunter every day.
Realize the full power of the drug-disease research graph!


Choose Username:
Email:
Password:
Verify Password:
Enter Code Shown: